Elucidating the Utility of Genomic Elements with Neural Nets

EUGENe is a Python toolkit for building and evaluating sequence-based deep learning models in genomics. It provides a unified workflow for managing data, training models, and interpreting predictions on biological sequences.

You can find the current documentation here for getting started.

If you use EUGENe for your research, please cite our paper: Klie et al. Nature Computational Science 2023